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Journal: STAR Protocols
Article Title: Protocol to quantify the activation dynamics of tumor-associated T cells in mice by functional intravital microscopy
doi: 10.1016/j.xpro.2024.103310
Figure Lengend Snippet: Parameter extraction using the Matlab “CellTracker” script (A) Template of the Excel file for Matlab. (B) From the Matlab environment, navigate to the folder containing the CellTracker scripts. Type “CellTracker” in the Matlab Command Window. (C) In the CellTracker GUI, navigate to the file to analyze (yellow box) and set the Cycle Time, in this case 5 s (red box). Do not use the crossed-out options; these are deprecated options to produce graphs, which are no longer working. We customarily produce graphs of the desired parameters using Prism (GraphPad). See also Tables 2 and .
Article Snippet: Practice dataset containing unprocessed and processed Imaris files and the MATLAB analyses , This paper , Mendeley Data: https://doi.org/10.17632/t7tr42ztt5.2.
Techniques: Extraction